This site is not designed for mobile browsers or browsers with too small size

Systems Genomics and Bioinformatics Unit · Laboratory of Systems Biology · National Institute of Allergy and Infectious Diseases
OMics Compendia Commons (OMiCC)

Analysis Run

Note: If in doubt about data analysis and result interpretation, please see our Tutorial and/or consult with your bioinformatics colleagues
Analysis Run ID:
1118
Compendium Name:
Germ-free mouse intestine
Status:
Completed
Input Parameters:
Gene or Probe?:
Gene
Differential Gene Threshold Field:
adj.P.Val
Differential Gene Threshold Value:
0.05
Comparison Group Pairs:
CGP Name Normalized Data Non-reference Condition Reference condition
GSE5198-GermFree::GSE5198-Colonized Back to Study Normalized GEO Data C1: GSE5198-Ileum-GF C2: GSE5198-Ileum-Reconv
GSE1392-Colon-GF::GSE1392-Colon Back to Study Normalized GEO Data C1: GSE1392-Colon-GF C2: GSE1392-Colon
GSE1392-Jejunum-GF::GSE1392-Jejunum Back to Study Normalized GEO Data C1: GSE1392-Jejunum-GF C2: GSE1392-Jejunum
GSE18056-GF::GSE18056-Normal Back to Study Normalized GEO Data C1: GSE18056-Ileum-GF C2: GSE18056-Ileum
GSE18056-GF::GSE18056-Reconv-60d Back to Study Normalized GEO Data C1: GSE18056-Ileum-GF C2: GSE18056-Ileum-Reconv-60d
GSE18056-GF::GSE18056-Reconv-60d-H Back to Study Normalized GEO Data C1: GSE18056-Ileum-GF C2: GSE18056-Ileum-Reconv-60d-H
GSE18056-GF::GSE18056-Reconv-8d Back to Study Normalized GEO Data C1: GSE18056-Ileum-GF C2: GSE18056-Ileum-Reconv-8d
GSE18056-GF::GSE18056-Reconv-8d-H Back to Study Normalized GEO Data C1: GSE18056-Ileum-GF C2: GSE18056-Ileum-Reconv-8d-H
GSE23573-GermFree-F-C57BL::GSE23573-F-B10A Back to Study Normalized GEO Data C1: GSE23573-Jejunum-GF-F-C57BL C2: GSE23573-Jejunum-F-B10A
GSE23573-GermFree-M-C57BL::GSE23573-M-B10A Back to Study Normalized GEO Data C1: GSE23573-Jejunum-GF-M-C57BL C2: GSE23573-Jejunum-M-B10A
GSE32084-GF-Untreated::GSE32084-Untreated Back to Study Normalized GEO Data C1: GSE32084-Small_Intestine-GF C2: GSE32084-Small_Intestine
GSE32513-Colon-GF::GSE32513-Colon-Conv-1d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-1d
GSE32513-Colon-GF::GSE32513-Colon-Conv-2d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-2d
GSE32513-Colon-GF::GSE32513-Colon-Conv-4d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-4d
GSE32513-Colon-GF::GSE32513-Colon-Conv-8d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-8d
GSE32513-Colon-GF::GSE32513-Colon-Conv-16d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-16d
GSE32513-Colon-GF::GSE32513-Colon-Conv-30d Back to Study Normalized GEO Data C1: GSE32513-Colon-GF C2: GSE32513-Colon-Conv-30d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-16d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-16d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-1d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-1d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-2d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-2d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-30d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-30d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-4d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-4d
GSE32513-Ileum-GF::GSE32513-Ileum-Conv-8d Back to Study Normalized GEO Data C1: GSE32513-Ileum-GF C2: GSE32513-Ileum-Conv-8d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-16d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-16d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-1d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-1d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-2d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-2d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-30d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-30d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-4d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-4d
GSE32513-Jejunum-GF::GSE32513-Jejunum-Conv-8d Back to Study Normalized GEO Data C1: GSE32513-Jejunum-GF C2: GSE32513-Jejunum-Conv-8d
GSE46952-Ileum-GF::GSE46952-Ileum-ReConv Back to Study Normalized GEO Data C1: GSE46952-Ileum-GF C2: GSE46952-Ileum-ReConv
GSE8006-Colon-GF::GSE8006-Colon Back to Study Normalized GEO Data C1: GSE8006-Colon-GF C2: GSE8006-Colon

Note: The "up-regulated" genes correspond to those with higher expression in the non-reference condition relative to the reference condition and vice versa for the "down-regulated" genes

Meta-analysis results: